| 12:00 - 13:00 |
Registration and Lunch |
BH participatns |
| 13:00 - 13:15 |
Opening and welcome |
The Organising Committee |
| 13:15 - 13:35 | Text mining | Data |
|
13.- C-SPARQL powered querying pipeline of bioRxiv publications
|
Mustafa Anil Tuncel |
|
14.- Improve Orphanet disease description knowledge by phenotypic automated recognition using scrapping toolkits
|
David Lagorce |
| 13:35 - 14:20 | STRUCTURED METADATA | INTEROP |
|
11.- Adding Bioschemas markup to data repositories and developing tools to find, consume and use it
|
Alasdair Gray |
|
28.- From Biotea to Bioschemas: definition of profiles required to represent scholarly publications
|
Alexander Garcia |
|
29.- Pathway effect prediction for protein targets
|
Rabie Saidi |
|
24.- Putting structured data into individual entry pages in biological database
|
Jun-ichi Onami |
| 14:20 - 14:50 | COFFEE BREAK | |
| 14:50 - 15:10 | IDENTIFIERS | INTEROP |
|
02.- Support tools for rapid adoption of compact identifiers in the publishing process
|
Manuel Bernal Llinares |
|
26.- Using blockchain in biomedical provenance, the identifiers use case.
|
Carlos Castro Iragorri |
| 15:10 - 15:40 | DATA DISTRIBUTION | INTEROP |
|
23.- Application of RDF-based models and tools for enhancing interoperable use of biomedical resources
|
Toshiaki Katayama |
|
22.- Transfer of Research Assets between FAIRDOM SEEKs
|
Stuart Owen |
|
18.- Prototyping the new PSICQUIC 2.0
|
Noemi del Toro |
| 15:40 - 16:20 | DATA INTEGRATION | INTEROP |
|
01.- OmicsPath: Finding Relevant omics datasets using pathway information
|
Yasset Perez-Riverol |
|
07.- Exploring Pharmacogenomic LOD for Molecular Explanations of Gene-Drug Relationships
|
Adrien Coulet |
|
13.- Development of a catalog of federated SPARQL queries in the field of Rare Diseases
|
Marc Hanauer |
|
25.- ProtVista (protein annotation viewer) extension using Bioschemas data
|
Leyla Garcia |
| 16:20 - 16:40 | VALIDATION | INTEROP |
|
08.- Data clearinghouse, validation and curation of BioSamples/ENA/Breeding API endpoints/MAR databases
|
Luca Cherubin |
|
04.- JSON schema validation with ontologies
|
Simon Jupp |
| 16:40 - 16:50 | CONTAINERS | TOOLS |
|
06.- Bioconda packaging of the Regulatory Sequence Analysis Tools (RSAT)
|
Jacques van Helden |
| 16:50 - 17:00 | TOOLS DISCOVERY | TOOLS |
|
03.- bio.tools & EDAM drop-in hackathon & discussions
|
Jon Ison |
| 17:00 - 17:30 | COFFEE BREAK | |
| 17:30 - 17:40 | VISUALISATION | TOOLS |
|
04.- Development of BioJS components
|
Yo Yehudi |
| 17:40 - 18:30 | WORKFLOWS | TOOLS |
|
17.- CWL support in Galaxy
|
Hervé Ménager |
|
15.- Development of a GA4GH-compliant, language-agnostic workflow execution service
|
Alexander Kanitz |
|
19.- Enrichment and propagation of metagenomic experimental metadata
|
Ola Tarkowska |
|
27.- Import workflows into TeSS Concept Maps
|
Niall Beard |
|
20.- Improve Shiny and RStudio integration within Galaxy using Galaxy Interactive Environment
|
Gildas Le Corguillé |
| 18:30 - 19:00 | TRAINING MATERIALS | TRAINING |
|
16.- Alternative episodes for the 4 Open Source Software (4OSS) lesson focused on different Open Source technologies: Github, Docker, Jupyter Notebook and so on
|
Mateusz Kuzak |
|
21.- Assessing the FAIRness of Training Materials
|
Leyla Garcia |
|
10.- Galaxy training material improvement and extension
|
Bérénice Batut |
| 19:00 - 19:15 |
Japanese Biohackathon Update |
Toshiaki Katayama |
| 19:10 - 19:30 | BREAK | |
| 19:30 - 22:00 |
Dinner |
|