Programme

Programme

Symposium - Nov 12

12:00 - 13:00 Registration and Lunch BH participatns
13:00 - 13:15 Opening and welcome The Organising Committee
13:15 - 13:35

Text mining

Data

13.- C-SPARQL powered querying pipeline of bioRxiv publications Mustafa Anil Tuncel
14.- Improve Orphanet disease description knowledge by phenotypic automated recognition using scrapping toolkits David Lagorce
13:35 - 14:20

STRUCTURED METADATA

INTEROP

11.- Adding Bioschemas markup to data repositories and developing tools to find, consume and use it Alasdair Gray
28.- From Biotea to Bioschemas: definition of profiles required to represent scholarly publications Alexander Garcia
29.- Pathway effect prediction for protein targets Rabie Saidi
24.- Putting structured data into individual entry pages in biological database Jun-ichi Onami
14:20 - 14:50COFFEE BREAK
14:50 - 15:10

IDENTIFIERS

INTEROP

02.- Support tools for rapid adoption of compact identifiers in the publishing process Manuel Bernal Llinares
26.- Using blockchain in biomedical provenance, the identifiers use case. Carlos Castro Iragorri
15:10 - 15:40

DATA DISTRIBUTION

INTEROP

23.- Application of RDF-based models and tools for enhancing interoperable use of biomedical resources Toshiaki Katayama
22.- Transfer of Research Assets between FAIRDOM SEEKs Stuart Owen
18.- Prototyping the new PSICQUIC 2.0 Noemi del Toro
15:40 - 16:20

DATA INTEGRATION

INTEROP

01.- OmicsPath: Finding Relevant omics datasets using pathway information Yasset Perez-Riverol
07.- Exploring Pharmacogenomic LOD for Molecular Explanations of Gene-Drug Relationships Adrien Coulet
13.- Development of a catalog of federated SPARQL queries in the field of Rare Diseases Marc Hanauer
25.- ProtVista (protein annotation viewer) extension using Bioschemas data Leyla Garcia
16:20 - 16:40

VALIDATION

INTEROP

08.- Data clearinghouse, validation and curation of BioSamples/ENA/Breeding API endpoints/MAR databases Luca Cherubin
04.- JSON schema validation with ontologies Simon Jupp
16:40 - 16:50

CONTAINERS

TOOLS

06.- Bioconda packaging of the Regulatory Sequence Analysis Tools (RSAT) Jacques van Helden
16:50 - 17:00

TOOLS DISCOVERY

TOOLS

03.- bio.tools & EDAM drop-in hackathon & discussions Jon Ison
17:00 - 17:30COFFEE BREAK
17:30 - 17:40

VISUALISATION

TOOLS

04.- Development of BioJS components Yo Yehudi
17:40 - 18:30

WORKFLOWS

TOOLS

17.- CWL support in Galaxy Hervé Ménager
15.- Development of a GA4GH-compliant, language-agnostic workflow execution service Alexander Kanitz
19.- Enrichment and propagation of metagenomic experimental metadata Ola Tarkowska
27.- Import workflows into TeSS Concept Maps Niall Beard
20.- Improve Shiny and RStudio integration within Galaxy using Galaxy Interactive Environment Gildas Le Corguillé
18:30 - 19:00

TRAINING MATERIALS

TRAINING

16.- Alternative episodes for the 4 Open Source Software (4OSS) lesson focused on different Open Source technologies: Github, Docker, Jupyter Notebook and so on Mateusz Kuzak
21.- Assessing the FAIRness of Training Materials Leyla Garcia
10.- Galaxy training material improvement and extension Bérénice Batut
19:00 - 19:15 Japanese Biohackathon Update Toshiaki Katayama
19:10 - 19:30BREAK
19:30 - 22:00 Dinner

Hackathon - Nov 13

07:00 - 09:00 Breakfast
09:00 - 10:30 Hack
10:30 - 11:00 Break
11:00 - 12:00 Hack
12:00 - 13:00 Lunch
13:00 - 15:30 Hack
15:30 - 16:00 Break
16:00 - 19:00 Hack
19:00 - 20:00 Dinner
20:00 - 21:00 Drinks
21:00 - 24:00 Socialiseathon

Hackathon - Nov 14

07:00 - 09:00 Breakfast
09:00 - 10:30 Hack
10:30 - 11:00 Break
11:00 - 12:00 Hack
12:00 - 14:00 Lunch
14:00 - 14:30 Report
14:30 - 15:30 Hack
15:30 - 16:00 Break
16:00 - 19:00 Hack
19:00 - 20:00 Dinner
20:00 - 21:00 Drinks
21:00 - 24:00 Socialiseathon

Hackathon - Nov 15

07:00 - 09:00 Breakfast
09:00 - 10:30 Hack
10:30 - 11:00 Break
11:00 - 12:00 Hack
12:00 - 14:00 Lunch
14:00 - 14:30 Report
14:30 - 15:30 Hack
15:30 - 16:00 Break
16:00 - 19:00 Hack
19:00 - 20:00 Dinner
20:00 - 21:00 Drinks
21:00 - 24:00 Socialiseathon

Hackathon - Nov 16

07:00 - 09:00 Breakfast
09:00 - 10:30 Hack
10:30 - 11:00 Break
11:00 - 11:30 Hack
11:30 - 12:00 Report
12:00 - 13:00 Lunch
13:00 - 14:30 Writethon